Node 44
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	1	0	0	C	1
7	0	0	1	0	G	1
8	0	0	0	1	T	1
9	1	0	0	0	A	1
10	0	0	0	1	T	1
11	0	0	0	1	T	1
12	1	0	0	0	A	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0	0	1	T	1
16	1	0	0	0	A	1
17	0	0	1	0	G	1
18	0	1	0	0	C	1
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	0	1	0	0	C	1
24	0	0	1	0	G	1
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	1	0	0	0	A	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0	0	1	T	1
31	1	0	0	0	A	1
32	1	0	0	0	A	1
33	1	0	0	0	A	1
34	0	0	0	1	T	1
35	0	0	0	1	T	1
36	0	0	1	0	G	1
37	0	0	1	0	G	1
38	0	0	0	1	T	1
39	0	0	1	0	G	1
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	1	0	0	C	1
43	0	1	0	0	C	1
44	0	0	1	0	G	1
45	0	1	0	0	C	1
46	1	0	0	0	A	1
47	1	0	0	0	A	1
48	0	0.01	0	0.99	T	0.99
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	1	0	0	0	A	1
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0	0	1	T	1
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	1	0	0	0	A	1
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	1	0	0	0	A	1
62	1	0	0	0	A	1
63	0	1	0	0	C	1
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	0	0	1	T	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0	0	1	T	1
70	0	0	1	0	G	1
71	0	0	0	1	T	1
72	1	0	0	0	A	1
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0	1	0	0	C	1
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0	0	1	T	1
82	0	0	1	0	G	1
83	1	0	0	0	A	1
84	1	0	0	0	A	1
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0	0	1	T	1
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0.41	0.06	0.01	0.52	T	0.52
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0.34	0.01	0.65	0.01	G	0.65
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	1	0	0	C	1
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	1	0	0	C	1
100	0	1	0	0	C	1
101	1	0	0	0	A	1
102	1	0	0	0	A	1
103	0	0	1	0	G	1
104	1	0	0	0	A	1
105	0.38	0.03	0.02	0.57	T	0.57
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	0	0	1	T	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0	0	1	0	G	1
112	1	0	0	0	A	1
113	0	0	0	1	T	1
114	0	0	1	0	G	1
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0	0	1	T	1
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0	0	1	0	G	1
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0	0	1	T	1
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0.43	0.05	0.02	0.5	T	0.5
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	1	0	0	0	A	1
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0	0	1	0	G	1
137	0	0	0	1	T	1
138	0	0	1	0	G	1
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	1	0	0	C	1
142	1	0	0	0	A	1
143	0	0	0	1	T	1
144	0	0	1	0	G	1
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0	0	1	0	G	1
148	0	1	0	0	C	1
149	1	0	0	0	A	1
150	1	0	0	0	A	1
151	1	0	0	0	A	1
152	1	0	0	0	A	1
153	0	1	0	0	C	1
154	0	0	1	0	G	1
155	0	0	1	0	G	1
156	0.01	0.05	0.18	0.76	T	0.76
157	0	0	1	0	G	1
158	0	0	0	1	T	1
159	0.34	0.01	0.65	0.01	G	0.65
160	1	0	0	0	A	1
161	0	1	0	0	C	1
162	0.67	0	0.32	0	A	0.67
163	0	1	0	0	C	1
164	0	1	0	0	C	1
165	1	0	0	0	A	1
166	1	0	0	0	A	1
167	0	1	0	0	C	1
168	0	1	0	0	C	1
169	1	0	0	0	A	1
170	1	0	0	0	A	1
171	0	0	0	0.99	T	0.99
172	0	0	1	0	G	1
173	0	0	1	0	G	1
174	0	0	0	1	T	1
175	0.95	0.05	0	0	A	0.95
176	0	0	0	1	T	1
177	0	0	1	0	G	1
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0	0	1	T	1
181	1	0	0	0	A	1
182	0	1	0	0	C	1
183	0	0	0	1	T	1
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0	0	0	1	T	1
187	1	0	0	0	A	1
188	1	0	0	0	A	1
189	0	0	0	1	T	1
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0	0	1	T	1
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.21	0	0.79	T	0.79
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	1	0	0	C	1
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.87	0	0.13	C	0.87
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0	0	0	1	T	1
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0	0	1	T	1
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0	0	0	0.99	T	0.99
220	0	0	1	0	G	1
221	1	0	0	0	A	1
222	1	0	0	0	A	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0	0	0	0.99	T	0.99
226	1	0	0	0	A	1
227	0	0	1	0	G	1
228	0	0	0	1	T	1
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	0	0	1	0	G	1
232	0	1	0	0	C	1
233	1	0	0	0	A	1
234	0.65	0.01	0.34	0.01	A	0.65
235	0	0	1	0	G	1
236	0	0	0	1	T	1
237	0	0	1	0	G	1
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	1	0	0	0	A	1
241	0	0	1	0	G	1
242	0	0	0	1	T	1
243	0.01	0.05	0.18	0.76	T	0.76
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0	0	1	0	G	1
247	0	0	1	0	G	1
248	1	0	0	0	A	1
249	0	0	1	0	G	1
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0	0	1	0	G	1
254	0	1	0	0	C	1
255	0.34	0.01	0.65	0.01	G	0.65
256	0	1	0	0	C	1
257	1	0	0	0	A	1
258	1	0	0	0	A	1
259	0	0	0	1	T	1
260	0	0	0	1	T	1
261	1	0	0	0	A	1
262	1	0	0	0	A	1
263	0	1	0	0	C	1
264	0	1	0	0	C	1
265	1	0	0	0	A	1
266	0	1	0	0	C	1
267	0.66	0.02	0.02	0.29	A	0.66
268	0	0	1	0	G	1
269	1	0	0	0	A	1
270	1	0	0	0	A	1
271	0	0	1	0	G	1
272	0	0	0	1	T	1
273	0	0	1	0	G	1
274	0	0	1	0	G	1
275	0	1	0	0	C	1
276	0	0	0	1	T	1
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.16	0	0.84	T	0.84
280	0	1	0	0	C	1
281	1	0	0	0	A	1
282	1	0	0	0	A	1
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0	0	1	T	1
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	1	0	0	0	A	1
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.89	0	0.11	C	0.89
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0	0.01	0	0.99	T	0.99
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	1	0	0	0	A	1
302	0	1	0	0	C	1
303	0	0.21	0	0.79	T	0.79
304	0	0	0	1	T	1
305	0	0	0	1	T	1
306	0	0	1	0	G	1
307	0	0	1	0	G	1
308	0	0	0	1	T	1
309	0	0	1	0	G	1
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.57	0	0.43	C	0.57
313	0.45	0.06	0.02	0.47	T	0.47
314	0	0	1	0	G	1
315	0	0	0	1	T	1
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0	0	0	1	T	1
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	1	0	0	0	A	1
325	0	0	1	0	G	1
326	0	0	0	1	T	1
327	0	1	0	0	C	1
328	1	0	0	0	A	1
329	0	0	0	1	T	1
330	0	0	0	1	T	1
331	0	0	1	0	G	1
332	0.01	0.34	0	0.65	T	0.65
333	0	0	1	0	G	1
334	0	0	0	1	T	1
335	0	0	0	1	T	1
336	0.35	0	0.64	0	G	0.64
337	0	0	0	1	T	1
338	0	1	0	0	C	1
339	0.34	0.01	0.65	0.01	G	0.65
340	0.28	0	0.72	0	G	0.72
341	1	0	0	0	A	1
342	1	0	0	0	A	1
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0	0	1	0	G	1
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	1	0	0	0	A	1
349	1	0	0	0	A	1
350	0	0	0	1	T	1
351	0	0	0	1	T	1
352	0	0	1	0	G	1
353	0	1	0	0	C	1
354	0	0	1	0	G	1
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	0	1	T	1
360	0	0	0	1	T	1
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	1	0	0	0	A	1
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0	0	1	0	G	1
368	1	0	0	0	A	1
369	0	1	0	0	C	1
370	1	0	0	0	A	1
371	1	0	0	0	A	1
372	1	0	0	0	A	1
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0	0	1	0	G	1
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.01	0	0.99	T	0.99
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	1	0	0	C	1
385	0	0	0	1	T	1
386	0	0	0	1	T	1
387	1	0	0	0	A	1
388	0	0	1	0	G	1
389	0	0	1	0	G	1
390	0	0	0	1	T	1
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	1	0	0	0	A	1
394	1	0	0	0	A	1
395	1	0	0	0	A	1
396	0	1	0	0	C	1
397	0	1	0	0	C	1
398	0	1	0	0	C	1
399	1	0	0	0	A	1
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	1	0	0	0	A	1
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	0	0	1	0	G	1
411	1	0	0	0	A	1
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0	0	1	0	G	1
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0	0	1	0	G	1
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	1	0	0	0	A	1
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.54	0	0.46	0	A	0.54
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.56	0	0.44	C	0.56
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.8	0	0.19	C	0.8
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0	0	1	T	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	1	0	0	C	1
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	1	0	0	C	1
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	0	0	1	T	1
452	0	0	0	1	T	1
453	0	0	1	0	G	1
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0	0	1	T	1
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	0	0	1	0	G	1


The most probable ancestral DNA sequence is:
ATGATCGTATTAGATAGCTTAGCGCAATTTAAATTGGTGTACCGCAATGGACGTAAATGGAACCGTTGTGTAGAAGCCATTGAAAATATTGAGAACATCCAAGATGGTGTGATGCATTCGATTGGTGATTCACTGGTGTACATGGTGCAAAACGGTGTGACACCAACCAATGGTATGTTTACTGGTAATCGTCGTTACTTCGATGTGCATTACTACCTTGAAGGTAGTGAGCAAGTGGAAGTTGCGGAGAAAGCGCAATTAACCACAGAAGTGGCTTATCAAGATGAAACAGACCGTGAAACTTTGGTGGGCTGT---GGTGAAGTCATTGTGTTGTCGGAAGGGCAAATTGCGATTTTTGAAAACGACAAAGCGTACCGTTTCTTAGGTGAAAACCCAGTA------AGAAAAGTGGTGCTAAAAGTAACCATCGAAGATGGCTACTTCTTGAATAAATAG

The most probable DNA sequence without gaps is:
ATGATCGTATTAGATAGCTTAGCGCAATTTAAATTGGTGTACCGCAATGGACGTAAATGGAACCGTTGTGTAGAAGCCATTGAAAATATTGAGAACATCCAAGATGGTGTGATGCATTCGATTGGTGATTCACTGGTGTACATGGTGCAAAACGGTGTGACACCAACCAATGGTATGTTTACTGGTAATCGTCGTTACTTCGATGTGCATTACTACCTTGAAGGTAGTGAGCAAGTGGAAGTTGCGGAGAAAGCGCAATTAACCACAGAAGTGGCTTATCAAGATGAAACAGACCGTGAAACTTTGGTGGGCTGTGGTGAAGTCATTGTGTTGTCGGAAGGGCAAATTGCGATTTTTGAAAACGACAAAGCGTACCGTTTCTTAGGTGAAAACCCAGTAAGAAAAGTGGTGCTAAAAGTAACCATCGAAGATGGCTACTTCTTGAATAAATAG

The accuracy score for that sequence is 0.981699779249448

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 3.09534260107077e-05.
The natural log of that probability is -10.3830268699451.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
A	1	R	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
K	1	A	0	9999	
L	1	A	0	9999	
V	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
N	1	A	0	9999	
G	1	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	1	A	0	9999	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
N	1	A	0	9999	
I	0.99	M	0.01	99	
E	0.99	D	0.02	49.5	
N	1	A	0	9999	
I	1	A	0	9999	
Q	1	A	0	9999	
D	0.6	E	0.4	1.5	Unreliable
G	1	A	0	9999	
V	1	A	0	9999	
M	1	A	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
V	1	A	0	9999	
Y	1	A	0	9999	
M	1	A	0	9999	
V	1	A	0	9999	
Q	1	A	0	9999	
N	1	A	0	9999	
G	1	A	0	9999	
V	1.01	A	0	9999	
T	0.99	A	0	9999	
P	1	A	0	9999	
T	1	A	0	9999	
N	0.99	A	0	9999	
G	1	A	0	9999	
M	0.95	L	0.05	19	
F	1	A	0	9999	
T	1	A	0	9999	
G	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
D	1	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	0.99	A	0	9999	
E	1	A	0	9999	
G	0.99	A	0	9999	
S	1	A	0	9999	
E	1	A	0	9999	
Q	0.99	H	0.02	49.5	
V	1	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
A	1	R	0	9999	
E	1	A	0	9999	
K	1	A	0	9999	
A	1.01	R	0	9999	
Q	1	A	0	9999	
L	1	A	0	9999	
T	1	A	0	9999	
T	0.99	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
Q	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
L	1	A	0	9999	
V	1	A	0	9999	
G	1	A	0	9999	
C	0.47	S	0.45	1.04444444444444	Unreliable
	0	-	0	0
G	1	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
I	1	A	0	9999	
V	0.65	A	0.34	1.91176470588235	
L	0.99	A	0	9999	
S	1.01	A	0	9999	
E	0.72	K	0.28	2.57142857142857	
G	1	A	0	9999	
Q	1	A	0	9999	
I	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
F	1	A	0	9999	
E	1	A	0	9999	
N	1	A	0	9999	
D	1	A	0	9999	
K	1	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
L	1	A	0	9999	
G	1	A	0	9999	
E	1	A	0	9999	
N	1	A	0	9999	
P	1	A	0	9999	
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
R	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
T	1	A	0	9999	
I	0.99	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	1	A	0	9999	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIVLDSLAQFKLVYRNGRKWNRCVEAIENIENIQDGVMHSIGDSLVYMVQNGVTPTNGMFTGNRRYFDVHYYLEGSEQVEVAEKAQLTTEVAYQDETDRETLVGC-GEVIVLSEGQIAIFENDKAYRFLGENPV--RKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MIVLDSLAQFKLVYRNGRKWNRCVEAIENIENIQDGVMHSIGDSLVYMVQNGVTPTNGMFTGNRRYFDVHYYLEGSEQVEVAEKAQLTTEVAYQDETDRETLVGCGEVIVLSEGQIAIFENDKAYRFLGENPVRKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.98887417218543

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.116824689120218
The natural log of that probability is -2.14708085147157.

